# NousResearch/hermes-agent · Codex config.toml generation bugs and fixes

## Open now

- Nothing open on GitHub.

These items concern bugs in the Hermes codex-runtime migration tool that produced invalid config.toml files, including duplicate plugin table keys, incorrectly scoped default_permissions, and leaked HERMES_HOME values. Fixes address de-duplication and config generation correctness.

## TL;DR

- 3 member(s): 0 open issue(s), 1 closed issue(s), 0 open PR(s), 1 merged PR(s), 1 PR(s) closed without merging.
- A fix was merged to main in PR #26260. Verify it addresses your case.
- **Recommended:** read PR #26260 (and any competing PRs below) before filing. Confirm the merged change covers your symptom.

## Maintainer resolution verdict

- Internal-tracker verdict over this cluster's issue members: `resolved` · deciding PR(s): `pr-26260`. This is distinct from the fix status above. Weigh it yourself.

## How this cluster was grouped

- Link evidence (`STRUCTURAL_SPANNING`): every member is connected by structural evidence: shared changed files, or a closing/superseded reference.
- Pairwise link density `0.67`: the share of member pairs that carry a link, counting a structural link in full and a relevance-only link at 0.36. `1.00` means every pair is linked.

## Closed / duplicate issues

- #26250: hermes codex-runtime migrate produces invalid ~/.codex/config.toml (duplicate keys, scoped default_permissions, leaked HERMES_HOME)

## Prior & competing PRs

- **#26259: fix(codex-migration): three bugs in codex config.toml generation (#26250)**. closed without merge · fix tier `suggested`
  - maintainer direction: category `uncategorized`; implication `needs_llm`
- **#26260: fix(codex-runtime): de-dup \[plugins.X\] tables and stop leaking HERMES_HOME into config.toml (#26250)**. merged to main · fix tier `verified`
  - maintainer direction: category `merged`
  - files: `hermes_cli/codex_runtime_plugin_migration.py`, `tests/hermes_cli/test_codex_runtime_plugin_migration.py`, `tests/hermes_cli/test_codex_runtime_switch.py`

## Fix status

- Merged to main in PR #26260 (cited above). No release data is tracked. Verify downstream.
- Fix last verified (merged) `2026-05-15`.